Saturday, 13 August, 2022

Tal Effectors

Transcription activator-like effector nuclease

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  • daTALbase: a database for genomic and transcriptomic data related to TAL effectors.
daTALbase: a database for genomic and transcriptomic data related to TAL effectors.
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daTALbase: a database for genomic and transcriptomic data related to TAL effectors.

Transcription activator-like effectors (TALEs) are proteins discovered within the genus Xanthomonas of phytopathogenic micro organism. These proteins enter the nucleus of cells within the host plant and can induce the expression of susceptibility genes (S genes), triggering illness. TALEs bind the promoter area of S genes following a particular code, which permits the prediction of binding websites based mostly on TALEs amino acid sequences.
New candidate S genes can then be found by discovering the intersection between genes induced within the presence of TALEs and genes containing predicted effector binding components. By contrasting differential expression data and binding website predictions throughout totally different datasets, patterns of TALE diversification or convergence could also be unveiled, however this requires the seamless integration of various genomic and transcriptomic data.
With this in thoughts, we current daTALbase, a curated relational database that integrates TALE-related data together with bacterial TALE sequences, plant promoter sequences, predicted TALE binding websites, transcriptomic data of host crops in response to TALE-harboring micro organism, and different related data. The database might be explored to uncover new candidate S genes in addition to to research variation in TALE repertories and their corresponding targets. The first model of the database right here offered consists of data for Oryza sp.-Xanthomonas pv. oryzae interactions. Future variations of the database will incorporate info for different pathosystems involving TALEs.

The impact of accelerating numbers of repeats on TAL effector DNA binding specificity.

Transcription activator-like effectors (TALEs) acknowledge their DNA targets by way of tandem repeats, every specifying a single nucleotide base in a one-to-one sequential association. Due to this modularity and their capacity to bind lengthy DNA sequences with excessive specificity, TALEs have been utilized in many functions. Contributions of particular person repeat-nucleotide associations to affinity and specificity have been characterised.
Here, utilizing in vitro binding assays, we examined the connection between the variety of repeats in a TALE and its affinity, for each goal and non-target DNA. Each extra repeat offers additional binding power for the goal DNA, with the acquire decaying exponentially such that binding power saturates. Affinity for non-target DNA additionally will increase non-linearly with the variety of repeats, however with a slower decay of acquire.
The distinction between the impact of size on affinity for goal versus non-target DNA manifests in specificity growing then diminishing with growing TALE size, peaking between 15 and 19 repeats. Modeling throughout totally different hypothetical saturation ranges and charges of acquire decay, reflecting totally different repeat compositions, yielded a comparable vary of specificity optima. This vary encompasses the imply and median size of native TALEs, suggesting that these proteins as a group have developed for most specificity.

Targeted promoter enhancing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential actions for SWEET14-inducing TAL effectors.

As a key virulence technique to trigger bacterial leaf blight, Xanthomonas oryzae pv. oryzae (Xoo) injects into the plant cell DNA-binding proteins referred to as transcription activator-like effectors (TALEs) that bind to effector-binding components (EBEs) in a sequence-specific method, leading to host gene induction. TALEs AvrXa7, PthXo3, TalC and Tal5, present in geographically distant Xoo strains, all goal OsSWEET14, thus thought of as a pivotal TALE goal performing as main susceptibility issue throughout rice-Xoo interactions.
Here, we report the technology of an allele library of the OsSWEET14 promoter via steady expression of TALE-nuclease (TALEN) constructs in rice. The susceptibility stage of traces carrying mutations in AvrXa7, Tal5 or TalC EBEs was assessed. Plants edited in AvrXa7 or Tal5 EBEs have been resistant to bacterial strains counting on the corresponding TALE. Surprisingly, though indels inside TalC EBE prevented OsSWEET14 induction in response to BAI3 wild-type micro organism counting on TalC, lack of TalC responsiveness failed to confer resistance to this pressure.
The TalC EBE mutant line was, nevertheless, resistant to a pressure expressing a synthetic SWEET14-inducing TALE whose EBE was additionally edited on this line. This work gives the primary set of alleles edited in TalC EBE and uncovers a distinct, broader vary of actions for TalC in contrast to AvrXa7 or Tal5. We suggest the existence of extra targets for TalC past SWEET14, suggesting that TALE-mediated plant susceptibility might consequence from induction of a number of, genetically redundant, host susceptibility genes by a single effector.

Deciphering TAL effectors for 5-methylcytosine and 5-hydroxymethylcytosine recognition.

DNA recognition by transcription activator-like effector (TALE) proteins is mediated by tandem repeats that specify nucleotides via repeat-variable diresidues. These repeat-variable diresidues type direct and sequence-specific contacts to DNA bases; therefore, TALE-DNA interplay is delicate to DNA chemical modifications. Here we conduct a thorough investigation, overlaying all theoretical repeat-variable diresidue combos, for their recognition capabilities for 5-methylcytosine and 5-hydroxymethylcytosine, two vital epigenetic markers in greater eukaryotes.
daTALbase: a database for genomic and transcriptomic data related to TAL effectors.
We determine each particular and degenerate repeat-variable diresidues for 5-methylcytosine and 5-hydroxymethylcytosine. Utilizing these novel repeat-variable diresidues, we obtain methylation-dependent gene activation and genome enhancing in vivo; we additionally report base-resolution detection of 5hmC in an in vitro assay.

NEIL3 Antibody

CSB-PA065468-100ul Cusabio 100ul 316 EUR
Description: A polyclonal antibody against NEIL3. Recognizes NEIL3 from Human. This antibody is Unconjugated. Tested in the following application: ELISA, WB;WB:1:500-1:3000

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Description: A polyclonal antibody against NEIL3. Recognizes NEIL3 from Human, Mouse. This antibody is Unconjugated. Tested in the following application: ELISA, WB

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Description: NEIL3 Antibody detects endogenous levels of total NEIL3.

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Description: Mouse monoclonal NEIL3 antibody

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Description: Rabbit polyclonal NEIL3 antibody

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Description: Rabbit Polyclonal NEIL3 antibody

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Description: Purified Polyclonal NEIL3 antibody

Mouse Nei Endonuclease VIII Like Protein 3 (NEIL3) ELISA Kit

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Mouse Nei Endonuclease VIII Like Protein 3 (NEIL3) ELISA Kit

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Mouse Nei Endonuclease VIII Like Protein 3 (NEIL3) ELISA Kit

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Description: A sandwich quantitative ELISA assay kit for detection of Mouse Nei Endonuclease VIII Like Protein 3 (NEIL3) in samples from tissue homogenates, cell lysates or other biological fluids.

Mouse Nei Endonuclease VIII Like Protein 3 (NEIL3) ELISA Kit

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Description: A sandwich quantitative ELISA assay kit for detection of Mouse Nei Endonuclease VIII Like Protein 3 (NEIL3) in samples from tissue homogenates, cell lysates or other biological fluids.

Mouse Nei Endonuclease VIII Like Protein 3 (NEIL3) ELISA Kit

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NEIL3 Polyclonal Antibody

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Description: A Rabbit Polyclonal antibody against NEIL3 from Human/Mouse. This antibody is tested and validated for WB, ELISA, IHC, WB, ELISA

NEIL3 Polyclonal Antibody

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Description: A Rabbit Polyclonal antibody against NEIL3 from Human/Mouse. This antibody is tested and validated for WB, ELISA, IHC, WB, ELISA

NEIL3 Polyclonal Antibody

ABP51918-003ml Abbkine 0.03ml 158 EUR
Description: A polyclonal antibody for detection of NEIL3 from Human, Mouse. This NEIL3 antibody is for WB, IHC-P, ELISA. It is affinity-purified from rabbit antiserum by affinity-chromatography using epitope-specific immunogenand is unconjugated. The antibody is produced in rabbit by using as an immunogen synthesized peptide derived from the C-terminal region of human NEIL3 at AA range: 460-540

NEIL3 Polyclonal Antibody

ABP51918-01ml Abbkine 0.1ml 289 EUR
Description: A polyclonal antibody for detection of NEIL3 from Human, Mouse. This NEIL3 antibody is for WB, IHC-P, ELISA. It is affinity-purified from rabbit antiserum by affinity-chromatography using epitope-specific immunogenand is unconjugated. The antibody is produced in rabbit by using as an immunogen synthesized peptide derived from the C-terminal region of human NEIL3 at AA range: 460-540

NEIL3 Polyclonal Antibody

ABP51918-02ml Abbkine 0.2ml 414 EUR
Description: A polyclonal antibody for detection of NEIL3 from Human, Mouse. This NEIL3 antibody is for WB, IHC-P, ELISA. It is affinity-purified from rabbit antiserum by affinity-chromatography using epitope-specific immunogenand is unconjugated. The antibody is produced in rabbit by using as an immunogen synthesized peptide derived from the C-terminal region of human NEIL3 at AA range: 460-540

Anti-NEIL3 antibody

STJ94396 St John's Laboratory 200 µl 197 EUR
Description: Rabbit polyclonal to NEIL3.

NEIL3 Polyclonal Antibody

41212-100ul SAB 100ul 252 EUR

NEIL3 Polyclonal Antibody

41212-50ul SAB 50ul 187 EUR

anti- NEIL3 antibody

FNab05649 FN Test 100µg 585 EUR
Description: Antibody raised against NEIL3

Anti-NEIL3 antibody

PAab05649 Lifescience Market 100 ug 412 EUR

NEIL3 siRNA

20-abx925706 Abbexa
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Anti-NEIL3/Nei3 Antibody

A05497-1 BosterBio 100ul 397 EUR
Description: Rabbit Polyclonal Antibody for NEIL3 Antibody (NEIL3) detection.tested for WB in Human, Mouse.

NEIL3 Polyclonal Conjugated Antibody

C41212 SAB 100ul 397 EUR

Human NEIL3 shRNA Plasmid

20-abx960591 Abbexa
  • 801.00 EUR
  • 1121.00 EUR
  • 150 µg
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NEIL3 ELISA KIT|Human

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NEIL3 Recombinant Protein (Human)

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NEIL3 Blocking Peptide

20-abx063899 Abbexa
  • 272.00 EUR
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NEIL3 Blocking Peptide

DF4042-BP Affbiotech 1mg 195 EUR

NEIL3 ELISA Kit (Human) (OKEH05107)

OKEH05107 Aviva Systems Biology 96 Wells 727 EUR
Description: Description of target: DNA glycosylase which prefers single-stranded DNA (ssDNA), or partially ssDNA structures such as bubble and fork structures, to double-stranded DNA (dsDNA). In vitro, displays strong glycosylase activity towards the hydantoin lesions spiroiminodihydantoin (Sp) and guanidinohydantoin (Gh) in both ssDNA and dsDNA; also recognizes FapyA, FapyG, 5-OHU, 5-OHC, 5-OHMH, Tg and 8-oxoA lesions in ssDNA. No activity on 8-oxoG detected. Also shows weak DNA-(apurinic or apyrimidinic site) lyase activity. In vivo, appears to be the primary enzyme involved in removing Sp and Gh from ssDNA in neonatal tissues. Seems to be an important facilitator of cell proliferation in certain populations, for example neural stem/progenitor cells and tumor cells, suggesting a role in replication-associated DNA repair.;Species reactivity: Human;Application: ;Assay info: Assay Methodology: Quantitative Sandwich ELISA;Sensitivity: 0.417 ng/mL

NEIL3 ORF Vector (Human) (pORF)

ORF026030 ABM 1.0 ug DNA 405 EUR

Mouse NEIL3 shRNA Plasmid

20-abx982114 Abbexa
  • 801.00 EUR
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NEIL3 Recombinant Protein (Rat)

RP213656 ABM 100 ug Ask for price

NEIL3 Recombinant Protein (Mouse)

RP153635 ABM 100 ug Ask for price

NEIL3 sgRNA CRISPR Lentivector set (Human)

K1416101 ABM 3 x 1.0 ug 339 EUR

NEIL3 ELISA Kit (Mouse) (OKCD09389)

OKCD09389 Aviva Systems Biology 96 Wells 936 EUR
Description: Description of target: DNA glycosylase which prefers single-stranded DNA (ssDNA), or partially ssDNA structures such as bubble and fork structures, to double-stranded DNA (dsDNA). In vitro, displays strong glycosylase activity towards the hydantoin lesions spiroiminodihydantoin (Sp) and guanidinohydantoin (Gh) in both ssDNA and dsDNA; also recognizes FapyA, FapyG, 5-OHU, 5-OHC, 5-OHMH, Tg and 8-oxoA lesions in ssDNA. No activity on 8-oxoG detected. Also shows weak DNA-(apurinic or apyrimidinic site) lyase activity. In vivo, appears to be the primary enzyme involved in removing Sp and Gh from ssDNA in neonatal tissues. Seems to be an important facilitator of cell proliferation in certain populations, for example neural stem/progenitor cells and tumor cells, suggesting a role in replication-associated DNA repair.6 Publications;Species reactivity: Mouse;Application: ELISA;Assay info: ;Sensitivity: < 0.061ng/mL

NEIL3 ELISA Kit (Mouse) (OKEH03545)

OKEH03545 Aviva Systems Biology 96 Wells 727 EUR
Description: Description of target: DNA glycosylase which prefers single-stranded DNA (ssDNA), or partially ssDNA structures such as bubble and fork structures, to double-stranded DNA (dsDNA). In vitro, displays strong glycosylase activity towards the hydantoin lesions spiroiminodihydantoin (Sp) and guanidinohydantoin (Gh) in both ssDNA and dsDNA; also recognizes FapyA, FapyG, 5-OHU, 5-OHC, 5-OHMH, Tg and 8-oxoA lesions in ssDNA. No activity on 8-oxoG detected. Also shows weak DNA-(apurinic or apyrimidinic site) lyase activity. In vivo, appears to be the primary enzyme involved in removing Sp and Gh from ssDNA in neonatal tissues. Seems to be an important facilitator of cell proliferation in certain populations, for example neural stem/progenitor cells and tumor cells, suggesting a role in replication-associated DNA repair.6 Publications;Species reactivity: Mouse;Application: ;Assay info: Assay Methodology: Quantitative Sandwich ELISA;Sensitivity: 0.418 ng/mL

Neil3 ORF Vector (Rat) (pORF)

ORF071220 ABM 1.0 ug DNA 506 EUR

Neil3 ORF Vector (Mouse) (pORF)

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NEIL3 sgRNA CRISPR Lentivector (Human) (Target 1)

K1416102 ABM 1.0 ug DNA 154 EUR

NEIL3 sgRNA CRISPR Lentivector (Human) (Target 2)

K1416103 ABM 1.0 ug DNA 154 EUR

NEIL3 sgRNA CRISPR Lentivector (Human) (Target 3)

K1416104 ABM 1.0 ug DNA 154 EUR

NEIL3 Protein Vector (Human) (pPB-C-His)

PV104118 ABM 500 ng 552 EUR

NEIL3 Protein Vector (Human) (pPB-N-His)

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NEIL3 Protein Vector (Human) (pPM-C-HA)

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NEIL3 Protein Vector (Human) (pPM-C-His)

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Nei Endonuclease VIII Like Protein 3 (NEIL3) Antibody

20-abx129922 Abbexa
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Nei Endonuclease VIII Like Protein 3 (NEIL3) Antibody

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  • 1344.00 EUR
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  • 1 mg
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Nei Endonuclease VIII Like Protein 3 (NEIL3) Antibody

abx331074-100ul Abbexa 100 ul 425 EUR

Nei Endonuclease VIII Like Protein 3 (NEIL3) Antibody

20-abx325929 Abbexa
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  • 100 ug
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Human NEIL3/ Endonuclease 8-like 3 ELISA Kit

E1730Hu Sunlong 1 Kit 605 EUR

Human Endonuclease 8- like 3, NEIL3 ELISA KIT

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Neil3 sgRNA CRISPR Lentivector set (Rat)

K6401001 ABM 3 x 1.0 ug 339 EUR

Neil3 sgRNA CRISPR Lentivector set (Mouse)

K4227101 ABM 3 x 1.0 ug 339 EUR

Nei Endonuclease VIII-Like 3 (E. Coli) (NEIL3) Antibody

20-abx008114 Abbexa
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  • 100 ul
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Nei Endonuclease VIII-Like 3 (E. Coli) (NEIL3) Antibody

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Nei Endonuclease VIII-Like 3 (E. Coli) (NEIL3) Antibody

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Nei Endonuclease VIII-Like 3 (E. Coli) (NEIL3) Antibody

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  • 100 ug
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Nei Endonuclease VIII-Like 3 (E. Coli) (NEIL3) Antibody

abx235649-100ug Abbexa 100 ug 551 EUR

Neil3 sgRNA CRISPR Lentivector (Rat) (Target 1)

K6401002 ABM 1.0 ug DNA 154 EUR

Neil3 sgRNA CRISPR Lentivector (Rat) (Target 2)

K6401003 ABM 1.0 ug DNA 154 EUR

Neil3 sgRNA CRISPR Lentivector (Rat) (Target 3)

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Neil3 sgRNA CRISPR Lentivector (Mouse) (Target 1)

K4227102 ABM 1.0 ug DNA 154 EUR

Neil3 sgRNA CRISPR Lentivector (Mouse) (Target 2)

K4227103 ABM 1.0 ug DNA 154 EUR

Neil3 sgRNA CRISPR Lentivector (Mouse) (Target 3)

K4227104 ABM 1.0 ug DNA 154 EUR

NEIL3 Protein Vector (Rat) (pPB-C-His)

PV284878 ABM 500 ng 603 EUR

NEIL3 Protein Vector (Rat) (pPB-N-His)

PV284879 ABM 500 ng 603 EUR

NEIL3 Protein Vector (Rat) (pPM-C-HA)

PV284880 ABM 500 ng 603 EUR

NEIL3 Protein Vector (Rat) (pPM-C-His)

PV284881 ABM 500 ng 603 EUR

NEIL3 Protein Vector (Mouse) (pPB-C-His)

PV204850 ABM 500 ng 603 EUR

NEIL3 Protein Vector (Mouse) (pPB-N-His)

PV204851 ABM 500 ng 603 EUR

NEIL3 Protein Vector (Mouse) (pPM-C-HA)

PV204852 ABM 500 ng 603 EUR

NEIL3 Protein Vector (Mouse) (pPM-C-His)

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NEIL3 3'UTR GFP Stable Cell Line

TU065564 ABM 1.0 ml 1394 EUR

Neil3 3'UTR Luciferase Stable Cell Line

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Nei Endonuclease VIII Like Protein 3 (NEIL3) Polyclonal Antibody (Mouse)

4-PAN291Mu01 Cloud-Clone
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  • 337.00 EUR
  • 222.00 EUR
  • 100ul
  • 10ml
  • 1ml
  • 200ul
  • 20ul
Description: A Rabbit polyclonal antibody against Mouse Nei Endonuclease VIII Like Protein 3 (NEIL3)

NEIL3 sgRNA CRISPR/Cas9 All-in-One Lentivector set (Human)

K1416105 ABM 3 x 1.0 ug 376 EUR

Recombinant Nei Endonuclease VIII Like Protein 3 (NEIL3)

4-RPN291Mu01 Cloud-Clone
  • 494.24 EUR
  • 235.00 EUR
  • 1578.40 EUR
  • 592.80 EUR
  • 1085.60 EUR
  • 394.00 EUR
  • 3796.00 EUR
  • 100 ug
  • 10ug
  • 1 mg
  • 200 ug
  • 500 ug
  • 50ug
  • 5 mg
Description: Recombinant Mouse Nei Endonuclease VIII Like Protein 3 expressed in: E.coli

Mouse Neil3/ Endonuclease 8-like 3 ELISA Kit

E1017Mo Sunlong 1 Kit 632 EUR

Mouse Neil3(Endonuclease 8-like 3) ELISA Kit

EM0777 FN Test 96T 524.1 EUR
Description: Method of detection: Double Antibody, Sandwich ELISA;Reacts with: Mus ;Sensitivity: 0.469 ng/ml

Bovine Endonuclease 8- like 3, NEIL3 ELISA KIT

ELI-23242b Lifescience Market 96 Tests 928 EUR

Mouse Endonuclease 8- like 3, Neil3 ELISA KIT

ELI-45664m Lifescience Market 96 Tests 865 EUR

Nei Endonuclease VIII Like Protein 3 (NEIL3) Polyclonal Antibody (Mouse), APC

4-PAN291Mu01-APC Cloud-Clone
  • 374.00 EUR
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  • 1016.00 EUR
  • 481.00 EUR
  • 232.00 EUR
  • 100ul
  • 10ml
  • 1ml
  • 200ul
  • 20ul
Description: A Rabbit polyclonal antibody against Mouse Nei Endonuclease VIII Like Protein 3 (NEIL3). This antibody is labeled with APC.

Nei Endonuclease VIII Like Protein 3 (NEIL3) Polyclonal Antibody (Mouse), Biotinylated

4-PAN291Mu01-Biotin Cloud-Clone
  • 332.00 EUR
  • 2763.00 EUR
  • 803.00 EUR
  • 411.00 EUR
  • 228.00 EUR
  • 100ul
  • 10ml
  • 1ml
  • 200ul
  • 20ul
Description: A Rabbit polyclonal antibody against Mouse Nei Endonuclease VIII Like Protein 3 (NEIL3). This antibody is labeled with Biotin.
Our work deciphers repeat-variable diresidues for 5-methylcytosine and 5-hydroxymethylcytosine, and offers instruments for TALE-dependent epigenome recognition.Transcription activator-like effector proteins recognise particular DNA sequences by way of tandem repeats. Here the authors show TALEs can recognise the methylated bases 5mC and 5hmC, enabling them to detect epigenetic modifications.

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